Welcome to protein_inference’s documentation!

Contents:

• Introduction
• Installation
  • Install with pip
  • Install from github
• Preparing Input Data
  • Converting Raw files with msConvert
  • Performing a search with Crux Comet
  • PSM Scoring with Percolator
  • Wrapping Up
  • Identification Pipeline Resources:
• Protein Inference in Python
  • Using the Package as is:
  • Using the package to visualize PSM Networks:
  • Using the package to implement a Protein Inference Strategy:
  • Running Unit Tests
• License
• Documentation
  • Core Functionality
  • Processing
  • Inference
• To Do List

Indices and tables

• Index

• Module Index

• Search Page